When I connecting the Naomi to a VGA monitor, i can not see anything (the dipswitch 1 is correct to off. In 15kHz i don't have problem in monitor CRT mounted in CAB).
The only game that works is Ikaruga (only when the game start, i can't see a naomi boot screen and test mode)...
I read that "HORIZONTAL SCANNING FREQUENCY: 15.85kHz / 31.69kHz" while my monitor accepts only 31.5 khz.
It sounds like your monitor just doesn't like the Naomi, try using a different monitor.
I think the jumpers mentioned are only present on the 2001 shorter main board version of the Naomi, but I don't have a functional one of those to play with.
Ikaruga outputs a slightly different sync rate than most other games according to that thread you linked. I don't have that game currently, but I know other games like Death Crimson do have control of the sync rate the Naomi outputs.
PC to TV adapters typically have even more trouble dealing with sync rates than regular PC monitors.
I meant that Death Crimson changes the sync rate on its own, not that you had manual control of the sync rate when using it. Sorry for the confusion.
In 15kHz mode of Death Crimson the startup screen is running at a different sync rate than what the game uses, which confuses one of the LCD monitors I was using it on (ended up with 'Insert Coins' at the top of the screen occasionally).